Basic Information
Locus ID:
Oco08G017170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 20438891 | 20443430 | + | Oco08G017170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 45,350.59 Da | 42.71 | 113.91 | 0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 75 | 230 | 3.5E-21 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 265 | 404 | 8.0E-22 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 104 | 241 | 2.9E-15 | IPR044880 |
| Gene3D | G3DSA:1.20.1420.30 | - | 251 | 408 | 5.7E-19 | IPR044880 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 41 | 407 | 9.7E-117 | - |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 56 | 407 | 7.1E-105 | IPR004798 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13320.1 | cation exchanger 2. low affinity calcium antiporter CAX2 | 0 |
| RefSeq | NP_001389377.1 | vacuolar cation/proton exchanger 3 [Oryza sativa Japonica Group] | 0 |
| Q6K1C4 | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0KW33 | Vacuolar cation/proton exchanger OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology