Basic Information
Locus ID:
Oco08G016800
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 20118403 | 20124629 | + | Oco08G016800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 65,040.60 Da | 33.33 | 100.14 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 1.83946E-26 | - |
| CDD | cd00030 | C2 | 442 | 531 | 1.01983E-27 | - |
| Pfam | PF00168 | C2 domain | 440 | 542 | 3.2E-27 | IPR000008 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 3.2E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.5E-13 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 436 | 552 | 8.4E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 390 | 7.83E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 397 | 2.9E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 424 | 558 | 2.9E-37 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 1.2E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 441 | 539 | 8.9E-24 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 27.866636 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 422 | 540 | 22.075583 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 21.834126 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 1.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 1.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 1.1E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015637265.1 | synaptotagmin-5 [Oryza sativa Japonica Group] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BSP2 | Synaptotagmin-5-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004244 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology