Basic Information
Locus ID:
Oco08G015840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 19406750 | 19407569 | + | Oco08G015840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 27,797.11 Da | 35.88 | 78.84 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 39 | 167 | 7.93012E-20 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 173 | 243 | 4.4E-11 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 170 | 245 | 2.62E-12 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 35 | 176 | 9.97E-29 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 35 | 168 | 1.2E-22 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 169 | 250 | 3.1E-15 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 175 | 244 | 11.067915 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 36 | 166 | 17.169186 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.5 | - | 0 |
| RefSeq | XP_052154360.1 | BTB/POZ and MATH domain-containing protein 1-like [Oryza glaberrima] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | Q01K93 | OSIGBa0148A10.5 protein OS=Oryza sativa OX=4530 GN=OSIGBa0148A10.5 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology