Basic Information
Locus ID:
Oco08G014400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 18153021 | 18154842 | + | Oco08G014400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 52,232.99 Da | 50.39 | 74.77 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 172 | 445 | 8.13965E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 306 | 9.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 445 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 360 | 0.0057 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 189 | 248 | 1.0E-6 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 149 | 447 | 1.1E-57 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 97 | 448 | 1.3E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 2.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 445 | 3.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 403 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 360 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 263 | 2.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 315 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 413 | 446 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 413 | 446 | 11.181047 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 274 | 308 | 11.629227 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 293 | 307 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 432 | 446 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_052151605.1 | cell division cycle 20.2, cofactor of APC complex-like isoform X2 [Oryza glaberrima] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3FZR4 | ANAPC4_WD40 domain-containing protein OS=Oryza barthii OX=65489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology