Basic Information
Locus ID:
Oco08G013980
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 17815750 | 17817137 | - | Oco08G013980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 38,773.84 Da | 54.35 | 65.41 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 154 | 197 | 4.37195E-17 | - |
| Pfam | PF13639 | Ring finger domain | 154 | 197 | 7.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 203 | 4.04E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 203 | 1.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 196 | 6.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 197 | 12.799091 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 340 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052151277.1 | E3 ubiquitin-protein ligase Os04g0590900 isoform X1 [Oryza glaberrima] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D3FZJ6 | RING-type E3 ubiquitin transferase OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology