Basic Information
Locus ID:
Oco08G013240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 17007326 | 17012092 | + | Oco08G013240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 24,960.96 Da | 48.25 | 73.45 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 43 | 117 | 6.5E-29 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 42 | 115 | 1.1E-29 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 193 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_015633830.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Oryza sativa Japonica Group] | 0 |
| Q9ES53 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Rattus norvegicus OX=10116 GN=Ufd1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BVN3 | Ubiquitin fusion degradation protein 1 homolog OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_009874 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology