Basic Information
Locus ID:
Oco08G011520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 15163072 | 15167274 | - | Oco08G011520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 41,170.81 Da | 37.85 | 74.85 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00018 | SH3 domain | 307 | 351 | 6.0E-10 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 43 | 255 | 5.76E-25 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 303 | 360 | 8.14E-16 | IPR036028 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 265 | 3.0E-13 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 305 | 357 | 5.6E-16 | - |
| SMART | SM00326 | SH3_2 | 303 | 358 | 5.3E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 300 | 359 | 18.91012 | IPR001452 |
| Coils | Coil | Coil | 146 | 173 | - | - |
| Coils | Coil | Coil | 190 | 210 | - | - |
| Coils | Coil | Coil | 217 | 237 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_015633415.1 | SH3 domain-containing protein 2 [Oryza sativa Japonica Group] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | Q7XR93 | Os04g0539800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0539800 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology