Basic Information
Locus ID:
Oco08G010220
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 13837273 | 13845634 | + | Oco08G010220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 87,690.07 Da | 47.16 | 68.12 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 528 | 805 | 7.03129E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 689 | 722 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 556 | 0.042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 563 | 598 | 8.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 606 | 641 | 0.0018 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 4.8E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 772 | 805 | 0.073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 518 | 805 | 1.42E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 507 | 650 | 2.4E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 651 | 805 | 4.1E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 602 | 642 | 4.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 766 | 805 | 0.0011 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.005 | IPR006594 |
| SMART | SM00320 | WD40_4 | 684 | 722 | 2.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 681 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 725 | 764 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 556 | 1.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 609 | 643 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 691 | 731 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 566 | 598 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 773 | 805 | 12.314676 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 773 | 805 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 566 | 598 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 565 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.181671 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 431 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
| Coils | Coil | Coil | 371 | 391 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_052152403.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Oryza glaberrima] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KSP5 | LisH domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology