Basic Information
Locus ID:
Oco08G009690
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 13332918 | 13339730 | - | Oco08G009690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 92,103.43 Da | 47.26 | 63.22 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 584 | 628 | 1.75375E-4 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 581 | 623 | 1.5E-8 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 36 | 245 | 3.54E-8 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 579 | 630 | 6.2E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 803 | 827 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 750 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_015636385.1 | uncharacterized protein LOC4336311 [Oryza sativa Japonica Group] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A0E0KSF3 | Tudor domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology