Basic Information
Locus ID:
Oco08G009250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 12930011 | 12937221 | + | Oco08G009250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 66,627.10 Da | 59.37 | 56.35 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 3.83519E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 265 | 4.8E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 329 | 8.4E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 2.15E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 215 | 2.57E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 272 | 2.07E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 217 | 1.4E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 516 | 7.1E-86 | - |
| SMART | SM00547 | zf_4 | 563 | 587 | 0.0082 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 278 | 339 | 0.046 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 203 | 265 | 3.6E-23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 343 | 50.101517 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 561 | 589 | 8.15148 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 178 | 8.71251 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 565 | 584 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_015636560.1 | probable E3 ubiquitin-protein ligase ARI8 [Oryza sativa Japonica Group] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0DFL0 | RBR-type E3 ubiquitin transferase OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology