Basic Information
Locus ID:
Oco08G008230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 12116702 | 12120968 | + | Oco08G008230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 81,041.61 Da | 40.10 | 86.98 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 351 | 651 | 5.59451E-179 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 36 | 334 | 4.04162E-176 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 356 | 647 | 3.0E-42 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 35 | 334 | 6.02E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 350 | 651 | 4.19E-51 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 34 | 334 | 6.8E-31 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 349 | 651 | 3.8E-55 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 36 | 335 | 32.875912 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 351 | 652 | 38.714264 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_052153376.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Oryza glaberrima] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | I1PM58 | glycerophosphodiester phosphodiesterase OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology