Basic Information
Locus ID:
Oco08G004490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 8396315 | 8398779 | - | Oco08G004490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 64,545.18 Da | 44.14 | 95.29 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 4.5E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 1 | 41 | 2.2E-17 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 35 | 4.32E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 32 | 533 | 5.65E-34 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 9.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 576 | 1.2E-174 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 310 | 333 | 50.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 23.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 8.4E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 476 | 501 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 0.46 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_006652225.1 | transport inhibitor response 1-like protein Os04g0395600 [Oryza brachyantha] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EKK4 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_015012 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology