Basic Information
Locus ID:
Oco08G003780
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 7600974 | 7602489 | - | Oco08G003780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 49,660.97 Da | 40.22 | 91.37 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 47 | 393 | 2.7E-47 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 45 | 397 | 3.28E-49 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 289 | 364 | 8.4E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 62 | 393 | 1.3E-69 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 288 | 364 | 1.3E-69 | IPR029070 |
| SMART | SM00636 | 2g34 | 44 | 393 | 8.6E-48 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 43 | 410 | 41.529564 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 444 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_015635030.1 | class V chitinase [Oryza sativa Japonica Group] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0IJ43 | GH18 domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology