Basic Information
Locus ID:
Oco08G002560
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
carbohydrate binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 5366507 | 5368390 | + | Oco08G002560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 33,332.48 Da | 54.22 | 79.02 | -0.30 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80110.1 | phloem protein 2-B11. | 0 |
| RefSeq | XP_052153284.1 | putative F-box protein PP2-B12 [Oryza glaberrima] | 0 |
| Q9FLU7 | Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV=1 | 0 | |
| TrEMBL | B8AS03 | F-box domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_15190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.7HG0746840.1, HORVU.MOREX.r3.7HG0746860.1 ... |
| Poaceae | Oryza coarctata | 1 | Oco08G002560 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g21130.1 |
| Poaceae | Thinopyrum elongatum | 4 | Tel7E01G924800, Tel7E01G924900, Tel7E01G925100 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG074080, gene_TRIDC7AG074090 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS7A02G530500.1, TraesCS7A02G530600.1 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1686 |
| Salicaceae | Populus euphratica | 1 | populus_peu13027 |