Basic Information
Locus ID:
Oco08G001630
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 2534646 | 2552870 | + | Oco08G001630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 76,989.23 Da | 64.37 | 70.71 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 654 | 696 | 7.68249E-19 | - |
| Pfam | PF13639 | Ring finger domain | 655 | 696 | 2.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 639 | 698 | 5.14E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 632 | 699 | 7.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 655 | 695 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 655 | 696 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 411 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015635980.1 | probable E3 ubiquitin-protein ligase HIP1 [Oryza sativa Japonica Group] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KMY5 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH09.294, BH09.389, CH09.407 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0354160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0098410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037823 |
| Poaceae | Oryza coarctata | 2 | Oco07G001300, Oco08G001630 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g10680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G036200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306075 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G017480, Chr25G014430, Chr26G002490, Chr30G014420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G067500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG002250, gene_TRIDC2BG002330 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G022100.1, TraesCS2B02G030700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb087670_P002, Zm00001eb419620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32173 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20972 |