Basic Information
Locus ID:
Oco08G001340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 2050577 | 2054492 | - | Oco08G001340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 59,471.24 Da | 66.74 | 74.67 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 432 | 517 | 3.3E-31 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 255 | 302 | 1.1E-8 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 163 | 395 | 1.4E-31 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 292 | 326 | 0.0031 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 256 | 289 | 2.1E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 253 | 283 | 9.514466 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 61 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_052154343.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Oryza glaberrima] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1F387 | DYW_deaminase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004482 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology