Basic Information
Locus ID:
Oco08G000910
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 1264643 | 1265561 | - | Oco08G000910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 31,459.78 Da | 34.30 | 74.64 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 38 | 277 | 1.99329E-63 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 41 | 280 | 5.8E-50 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 39 | 281 | 5.13E-57 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 38 | 283 | 3.6E-58 | - |
| PIRSF | PIRSF002690 | Plant_L_lectin | 34 | 283 | 5.9E-52 | IPR016363 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 159 | 165 | - | IPR019825 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006653141.2 | L-type lectin-domain containing receptor kinase IX.1-like [Oryza brachyantha] | 0 |
| P05046 | Lectin OS=Glycine max OX=3847 GN=LE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0U1WYH3 | Protein kinase OS=Oryza punctata OX=4537 GN=P6 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH04.1995, BH04.2001, BH04.2004, BH04.2007, BH04.2008 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.2HG0097640.1, HORVU.MOREX.r3.2HG0097720.1 ... |
| Poaceae | Lolium multiflorum | 15 | gene-QYE76_004354, gene-QYE76_004356, gene-QYE76_004362 ... |
| Poaceae | Oryza coarctata | 2 | Oco08G000910, Oco08G000950 |
| Poaceae | Oryza sativa | 16 | LOC_Os04g03370.1, LOC_Os04g03380.1, LOC_Os04g03530.1 ... |
| Poaceae | Paspalum vaginatum | 10 | gene-BS78_K006300, gene-BS78_K006400, gene-BS78_K006500 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300137, Pt_Chr0402868, Pt_Chr0500818, Pt_Chr0500820 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G056800, Tel2E01G048600, Tel2E01G048700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG001630, gene_TRIDC2BG001740 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G007400.2, TraesCS2B02G008400.1 ... |