Basic Information
Locus ID:
Oco07G020050
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 22883697 | 22892772 | - | Oco07G020050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 207,709.20 Da | 45.23 | 84.00 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 550 | 1099 | 3.32E-7 | IPR016024 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1487 | 1721 | 2.01E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1483 | 1809 | 2.0E-102 | IPR015943 |
| SMART | SM00667 | Lish | 1159 | 1191 | 0.0015 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1527 | 1567 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1572 | 1610 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1485 | 1524 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 1159 | 1191 | 9.427637 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1848 | 1895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 991 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1794 | 1910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 991 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1808 | 1834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 249 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31160.1 | DDB1-CUL4 associated factor 1. Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4, likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development. | 0 |
| RefSeq | XP_052151229.1 | DDB1- and CUL4-associated factor homolog 1 [Oryza glaberrima] | 0 |
| Q9M086 | DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCAF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0DKH8 | LisH domain-containing protein OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23679, jg36883, jg36884, jg36885 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13051 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034265 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20619, Sbi_jg23143 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16991 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009187 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63447, Sgl67926 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017778, gene:ENSEOMG00000018771 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012890, CQ.Regalona.r1.2BG0014760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30252430 |
| Apiaceae | Apium graveolens | 5 | Ag11G03697, Ag11G04180, Ag5G00952, Ag7G01268, Ag9G01552 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G019710, COCNU_11G003870 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702667, gene-LOC103711292 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G30737 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31160.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024189m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g085200.2N, BniB03g010590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2231 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2427 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03840 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0646s00003.v1.0, Dusal.0646s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g13820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1641 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028671 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12603 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2809, BH09.3041, CH09.3212 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298330, gene-QOZ80_4BG0329010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0216500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019402 |
| Poaceae | Oryza coarctata | 2 | Oco07G020050, Oco08G019340 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g59460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G294700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306883, Pt_Chr0503501 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G000190, Chr25G000150, Chr26G019010, Chr30G000220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G1059300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG081250, gene_TRIDC2BG089850 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G566600.1, TraesCS2B02G630100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb076460_P001, Zm00001eb434410_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-23277, nbis-gene-6271, nbis-gene-6272 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20745, Zma_g22296 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.169, evm.TU.LG15.40 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g17080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1043 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16895 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17332 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.166 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012205 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8592 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23035 |
| Salicaceae | Populus euphratica | 1 | populus_peu13122 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635571 |
| Solanaceae | Solanum chilense | 1 | SOLCI003202800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028463 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5302_chr02_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1166, TC11G1837 |
| Zosteraceae | Zostera marina | 1 | Zosma04g16140.v3.1 |