Basic Information
Locus ID:
Oco07G017390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 20618405 | 20623181 | + | Oco07G017390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 65,294.84 Da | 31.85 | 99.95 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 443 | 543 | 2.28407E-28 | - |
| CDD | cd00030 | C2 | 264 | 366 | 1.19856E-25 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 1.3E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 3.8E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 441 | 543 | 4.9E-27 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 439 | 560 | 1.02E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 2.28E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 424 | 559 | 5.7E-37 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 399 | 2.1E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 1.1E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 442 | 540 | 2.0E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 423 | 541 | 21.535854 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 25.991617 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 21.464838 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 484 | 497 | 6.6E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 506 | 514 | 6.6E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 458 | 470 | 6.6E-8 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015637265.1 | synaptotagmin-5 [Oryza sativa Japonica Group] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BSP2 | Synaptotagmin-5-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004244 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology