Basic Information
Locus ID:
Oco07G016950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 20272139 | 20274851 | + | Oco07G016950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 69,476.11 Da | 48.70 | 88.52 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 219 | 485 | 1.6E-92 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 2.8E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 20 | 118 | 2.59E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 23 | 139 | 4.1E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 31 | 138 | 0.0013 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 219 | 509 | 91.859535 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 31 | 101 | 10.923141 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 572 | - | - |
| Coils | Coil | Coil | 570 | 590 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_040379073.1 | BTB/POZ domain-containing protein At5g03250-like isoform X1 [Oryza brachyantha] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BT22 | BTB/POZ domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004322 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology