Basic Information
Locus ID:
Oco07G016700
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 19992441 | 20007291 | - | Oco07G016700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 116,363.07 Da | 48.19 | 79.78 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 298 | 658 | 1.716E-81 | - |
| CDD | cd18793 | SF2_C_SNF | 861 | 1003 | 1.47267E-51 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 891 | 993 | 5.8E-12 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 311 | 734 | 1.7E-65 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 774 | 810 | 3.8E-5 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 287 | 658 | 3.93E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 771 | 823 | 1.0E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 666 | 1050 | 4.56E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 271 | 362 | 5.9E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 533 | 670 | 3.1E-30 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 767 | 825 | 7.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 673 | 1049 | 5.9E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 426 | 523 | 1.8E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 910 | 993 | 4.7E-13 | IPR001650 |
| SMART | SM00184 | ring_2 | 774 | 814 | 3.4E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 294 | 625 | 9.0E-25 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 886 | 1046 | 13.516487 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 774 | 810 | 10.33534 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 446 | 620 | 13.086918 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 789 | 798 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 90 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_052152290.1 | helicase-like transcription factor CHR28 [Oryza glaberrima] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DDY8 | Helicase-like transcription factor CHR28 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004795 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology