Basic Information
Locus ID:
Oco07G016400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 19801270 | 19803587 | + | Oco07G016400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 42,596.36 Da | 37.68 | 87.68 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 54 | 175 | 1.96779E-23 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 203 | 313 | 5.91673E-48 | - |
| Pfam | PF00917 | MATH domain | 69 | 174 | 5.8E-7 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 205 | 314 | 2.0E-27 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 195 | 313 | 1.69E-32 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 187 | 1.21E-31 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 315 | 383 | 4.3E-19 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 189 | 310 | 5.0E-38 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 182 | 5.7E-26 | IPR008974 |
| SMART | SM00225 | BTB_4 | 214 | 316 | 6.7E-25 | IPR000210 |
| SMART | SM00061 | math_3 | 56 | 160 | 0.0012 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 177 | 20.288664 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 214 | 277 | 17.21047 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_006652854.1 | BTB/POZ and MATH domain-containing protein 2-like [Oryza brachyantha] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | J3M1L0 | BTB domain-containing protein OS=Oryza brachyantha OX=4533 GN=102712527 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology