Basic Information
Locus ID:
Oco07G014690
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 18221308 | 18224906 | - | Oco07G014690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 33,164.93 Da | 32.14 | 81.41 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 6 | 82 | 4.07E-9 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 77 | 2.0E-6 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 81 | 9.319809 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 246 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015633673.1 | binding partner of ACD11 1 isoform X3 [Oryza sativa Japonica Group] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KUL5 | RRM domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology