Basic Information
Locus ID:
Oco07G014520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 18078179 | 18079330 | - | Oco07G014520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 40,707.80 Da | 61.94 | 59.63 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 156 | 199 | 6.4209E-18 | - |
| Pfam | PF13639 | Ring finger domain | 156 | 199 | 7.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 205 | 4.24E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 205 | 8.1E-21 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 153 | 207 | 8.1E-4 | - |
| SMART | SM00184 | ring_2 | 157 | 198 | 6.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 12.784338 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 347 | - | - |
| Coils | Coil | Coil | 234 | 254 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015637095.1 | E3 ubiquitin-protein ligase Os04g0590900 [Oryza sativa Japonica Group] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D9ZPZ2 | RING-type E3 ubiquitin transferase OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology