Basic Information
Locus ID:
Oco07G014410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ABC transporter C family member 9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 17939863 | 17952178 | + | Oco07G014410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 134,526.56 Da | 39.46 | 95.05 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 452 | 652 | 2.69814E-106 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 140 | 426 | 6.292E-93 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 814 | 1004 | 1.54436E-55 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 144 | 391 | 6.2E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 470 | 604 | 1.1E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1032 | 1118 | 2.2E-7 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 823 | 971 | 1.4E-11 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 812 | 1009 | 2.88E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 448 | 664 | 2.37E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 130 | 432 | 1.28E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1034 | 1182 | 1.99E-38 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 800 | 1010 | 5.2E-31 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 125 | 435 | 8.8E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 447 | 668 | 8.5E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1023 | 1188 | 2.1E-44 | IPR027417 |
| SMART | SM00382 | AAA_5 | 479 | 652 | 2.9E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 452 | 675 | 21.455362 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 954 | 1187 | 13.038706 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 144 | 418 | 30.599232 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 823 | 992 | 20.019842 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 577 | 591 | - | IPR017871 |
| Coils | Coil | Coil | 973 | 1000 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_006652713.2 | putative ABC transporter C family member 15 [Oryza brachyantha] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0KUH3 | ABC transporter C family member 15 OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology