Basic Information
Locus ID:
Oco07G014400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ABC transporter C family member 9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 17926726 | 17934899 | + | Oco07G014400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 172,396.70 Da | 40.86 | 101.15 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 341 | 627 | 2.29382E-99 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 968 | 1262 | 5.32332E-96 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 653 | 853 | 4.584E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1285 | 1505 | 5.80814E-124 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 341 | 605 | 3.1E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1304 | 1452 | 2.7E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 671 | 805 | 2.4E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 984 | 1214 | 6.4E-34 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 334 | 635 | 4.84E-33 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 647 | 870 | 5.54E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1278 | 1516 | 3.16E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 968 | 1267 | 4.84E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 931 | 1268 | 8.3E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1270 | 1523 | 1.7E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 316 | 636 | 3.8E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 651 | 882 | 1.1E-67 | IPR027417 |
| SMART | SM00382 | AAA_5 | 680 | 853 | 3.4E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1313 | 1506 | 5.6E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1289 | 1521 | 16.653465 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 653 | 876 | 21.575409 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 970 | 1250 | 37.670536 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 343 | 619 | 32.915134 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 778 | 792 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 944 | - | - |
| Coils | Coil | Coil | 1506 | 1526 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_052152067.1 | putative ABC transporter C family member 15 [Oryza glaberrima] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1BWE9 | ABC transporter C family member 15 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014785 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology