Basic Information
Locus ID:
Oco07G014390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 17919054 | 17920697 | + | Oco07G014390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 60,676.37 Da | 54.04 | 86.80 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 48 | 203 | 6.07728E-25 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 83 | 143 | 3.9E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 9 | 359 | 1.2E-96 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 362 | 406 | 1.4E-9 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 361 | 495 | 3.53E-28 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 204 | 359 | 9.68E-55 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 6 | 201 | 2.29E-45 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 362 | 486 | 1.1E-21 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 41 | 197 | 8.7E-136 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 9 | 358 | 8.7E-136 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 543 | 4.4E-177 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 547 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25850.9 | - | 0 |
| RefSeq | XP_040379173.1 | nuclear poly(A) polymerase 2-like [Oryza brachyantha] | 0 |
| O82312 | Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=PAPS2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1BWL0 | Poly(A) polymerase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014784 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology