Basic Information
Locus ID:
Oco07G013730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 17279901 | 17284006 | + | Oco07G013730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 27,975.31 Da | 41.58 | 71.92 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 1 | 77 | 8.5E-30 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 55 | 78 | 5.1E-5 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 1 | 54 | 5.1E-19 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 124 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38930.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_015633830.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Oryza sativa Japonica Group] | 0 |
| Q9ES53 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Rattus norvegicus OX=10116 GN=Ufd1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BVN3 | Ubiquitin fusion degradation protein 1 homolog OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_009874 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology