Basic Information
Locus ID:
Oco07G011840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 15402286 | 15406610 | - | Oco07G011840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 41,245.05 Da | 37.96 | 74.29 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00018 | SH3 domain | 306 | 350 | 1.4E-9 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 299 | 359 | 6.04E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 254 | 1.22E-23 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 263 | 5.3E-11 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 304 | 356 | 3.0E-16 | - |
| SMART | SM00326 | SH3_2 | 302 | 357 | 2.3E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 299 | 358 | 19.575687 | IPR001452 |
| Coils | Coil | Coil | 189 | 209 | - | - |
| Coils | Coil | Coil | 146 | 173 | - | - |
| Coils | Coil | Coil | 216 | 236 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_006652590.1 | SH3 domain-containing protein 2-like [Oryza brachyantha] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | J3LZZ6 | SH3 domain-containing protein OS=Oryza brachyantha OX=4533 GN=102705809 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology