Basic Information
Locus ID:
Oco07G011330
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 14999321 | 15002778 | - | Oco07G011330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 30,145.66 Da | 62.66 | 81.52 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 54 | 108 | 6.12466E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 56 | 106 | 3.8E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 119 | 1.3E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 164 | 8.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 56 | 106 | 6.3E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 107 | 12.297489 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 71 | 80 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006652555.1 | E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Oryza brachyantha] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | J3LZU1 | RING-type E3 ubiquitin transferase OS=Oryza brachyantha OX=4533 GN=102719289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology