Basic Information
Locus ID:
Oco07G011250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 14948207 | 14954077 | + | Oco07G011250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 84,506.14 Da | 57.02 | 67.61 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 294 | 612 | 8.94877E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 440 | 477 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 434 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 573 | 611 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 327 | 5.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 294 | 620 | 1.85E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 374 | 646 | 1.5E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 267 | 371 | 6.6E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 438 | 477 | 1.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 612 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 570 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 435 | 3.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 479 | 518 | 1.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 444 | 478 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 444 | 478 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 15.186998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 330 | 12.130133 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 404 | 444 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 404 | 438 | 10.442869 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 422 | 436 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 315 | 329 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 464 | 478 | 2.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 680 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006653617.2 | WD repeat-containing protein 44-like [Oryza brachyantha] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | Q7XS41 | OSJNBa0074L08.11 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0074L08.11 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology