Basic Information
Locus ID:
Oco07G010450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 14012422 | 14019868 | + | Oco07G010450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 86,141.15 Da | 47.23 | 66.43 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 515 | 792 | 2.80987E-60 | - |
| Pfam | PF08513 | LisH | 10 | 35 | 2.8E-5 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 759 | 792 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 512 | 543 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 550 | 585 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 676 | 709 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 593 | 629 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 504 | 792 | 1.97E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 641 | 792 | 3.6E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 353 | 640 | 1.7E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 632 | 668 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 753 | 792 | 5.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 543 | 6.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 712 | 751 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 671 | 709 | 3.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 585 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 629 | 2.8E-5 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 8.8668 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 596 | 638 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 760 | 792 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 760 | 792 | 12.209223 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 553 | 585 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 511 | 552 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 553 | 585 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 678 | 718 | 9.539323 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 422 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
| Coils | Coil | Coil | 366 | 389 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015692315.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X3 [Oryza brachyantha] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KSP5 | LisH domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology