Basic Information
Locus ID:
Oco07G009910
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 13528148 | 13535077 | - | Oco07G009910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 92,611.00 Da | 48.16 | 64.03 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 589 | 631 | 0.00981876 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 586 | 627 | 9.78E-8 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 37 | 243 | 6.64E-6 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 584 | 635 | 7.2E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 812 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 838 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 460 | - | - |
| Coils | Coil | Coil | 810 | 830 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_052152472.1 | sister chromatid cohesion protein PDS5 homolog C-like [Oryza glaberrima] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A6G1BWV4 | Sister chromatid cohesion protein PDS5 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology