Basic Information
Locus ID:
Oco07G009150
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 12810482 | 12811195 | + | Oco07G009150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.99 | 27,226.67 Da | 43.20 | 80.67 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 183 | 229 | 1.0E-10 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 69 | 111 | 4.9E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 231 | 1.63E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 122 | 5.89E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 233 | 1.7E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 116 | 4.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 228 | 9.1E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 70 | 111 | 4.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 229 | 11.928664 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 70 | 111 | 11.294285 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01150.1 | RING-H2 finger protein 2B. Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils. | 0 |
| RefSeq | XP_052151787.1 | uncharacterized protein LOC127770159 [Oryza glaberrima] | 0 |
| Q9ZU51 | E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0H2D5 | RING-type domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH09.1386, AH09.1387, AH09.1454, BH09.1568, BH09.1569 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0311420, gene-QOZ80_4AG0312750 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G009150 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g41050.1, LOC_Os04g41070.1, LOC_Os04g41080.1 |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_02G337600, gene-BS78_03G158300 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G010060, Chr25G009600, Chr30G009440 |
| Poaceae | Zea mays | 8 | Zm00001eb078920_P001, Zm00001eb078930_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36940 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19953 |