Basic Information
Locus ID:
Oco07G008590
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
No apical meristem (NAM) protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 12391034 | 12396604 | - | Oco07G008590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 62,222.89 Da | 68.93 | 71.67 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 526 | 555 | 3.7E-10 | IPR002885 |
| Pfam | PF02365 | No apical meristem (NAM) protein | 59 | 200 | 4.6E-19 | IPR003441 |
| Pfam | PF01535 | PPR repeat | 499 | 524 | 0.027 | IPR002885 |
| SUPERFAMILY | SSF101941 | NAC domain | 42 | 219 | 6.93E-33 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 68 | 224 | 3.2E-26 | IPR036093 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 455 | 557 | 1.7E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 529 | 557 | 6.3E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 527 | 557 | 11.91499 | IPR002885 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 58 | 219 | 27.248411 | IPR003441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_052152232.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like [Oryza glaberrima] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KRW8 | NAC domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology