Basic Information
Locus ID:
Oco07G008330
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 12192595 | 12196934 | + | Oco07G008330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 50,491.61 Da | 37.88 | 87.22 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 38 | 336 | 5.14229E-180 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 358 | 445 | 4.1E-17 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 37 | 336 | 4.19E-43 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 352 | 446 | 2.38E-21 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 36 | 336 | 1.5E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 337 | 452 | 8.4E-19 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 38 | 337 | 33.598602 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 353 | 456 | 25.819546 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_052153376.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Oryza glaberrima] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BRN2 | glycerophosphodiester phosphodiesterase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002859 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology