Basic Information
Locus ID:
Oco07G007460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 11370682 | 11376004 | - | Oco07G007460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 69,270.28 Da | 39.58 | 94.53 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 1.8E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 304 | 575 | 2.3E-44 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 120 | 179 | 2.3E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 195 | 3.85E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 282 | 578 | 1.08E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 272 | 379 | 1.6E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 380 | 597 | 1.5E-69 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 214 | 1.0E-63 | IPR032675 |
| SMART | SM00220 | serkin_6 | 303 | 577 | 3.0E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 303 | 590 | 36.428276 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 309 | 331 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 426 | 438 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_040378931.1 | LRR receptor kinase SERK2 isoform X1 [Oryza brachyantha] | 0 |
| Q7XV05 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9W5R7 | Protein kinase domain-containing protein OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology