Basic Information
Locus ID:
Oco07G007190
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 11135307 | 11139119 | - | Oco07G007190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 49,483.12 Da | 79.42 | 77.31 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 207 | 250 | 6.98932E-18 | - |
| Pfam | PF13639 | Ring finger domain | 207 | 250 | 6.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 256 | 4.24E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 256 | 8.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 208 | 249 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 208 | 250 | 12.459772 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 48 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10380.1 | RING/U-box superfamily protein. Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. | 0 |
| RefSeq | XP_003579865.1 | RING-H2 finger protein ATL52 [Brachypodium distachyon] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BPM6 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology