Basic Information
Locus ID:
Oco07G006170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 10213664 | 10225762 | - | Oco07G006170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 133,639.97 Da | 46.60 | 79.82 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 642 | 774 | 1.11106E-68 | - |
| CDD | cd17920 | DEXHc_RecQ | 439 | 641 | 2.86167E-92 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 453 | 622 | 2.4E-20 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1010 | 1075 | 6.4E-16 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 658 | 764 | 1.3E-18 | IPR001650 |
| Pfam | PF09382 | RQC domain | 861 | 977 | 1.9E-21 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 776 | 854 | 6.7E-16 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 426 | 783 | 8.37E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1005 | 1080 | 5.23E-17 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 640 | 905 | 2.25E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 413 | 641 | 6.1E-93 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1001 | 1087 | 1.9E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 642 | 857 | 9.4E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 858 | 975 | 1.1E-19 | IPR036388 |
| SMART | SM00490 | helicmild6 | 684 | 765 | 7.7E-28 | IPR001650 |
| SMART | SM00956 | RQC_2 | 863 | 975 | 1.1E-20 | IPR018982 |
| SMART | SM00341 | hrdc7 | 1005 | 1085 | 1.8E-10 | IPR002121 |
| SMART | SM00487 | ultradead3 | 447 | 650 | 4.1E-34 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 443 | 914 | 4.5E-166 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 674 | 716 | 9.541615 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 659 | 816 | 19.641148 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 459 | 634 | 22.543167 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1005 | 1085 | 19.130539 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 573 | 582 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1086 | 1138 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_040379717.1 | ATP-dependent DNA helicase Q-like 4A [Oryza brachyantha] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | J3LY10 | DNA helicase OS=Oryza brachyantha OX=4533 GN=102722489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology