Basic Information
Locus ID:
Oco07G004360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 8356738 | 8358976 | - | Oco07G004360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 64,287.97 Da | 46.87 | 92.57 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 1 | 41 | 3.5E-15 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 6.1E-24 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 35 | 2.49E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 64 | 529 | 1.88E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 1.5E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 575 | 3.8E-177 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 58.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 280.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 120.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0025 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 0.51 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 67.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_006652225.1 | transport inhibitor response 1-like protein Os04g0395600 [Oryza brachyantha] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EKK4 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_015012 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology