Basic Information
Locus ID:
Oco07G003920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 7818817 | 7820506 | - | Oco07G003920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 41,062.07 Da | 51.65 | 77.59 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 328 | 368 | 5.9E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 326 | 373 | 8.55E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 112 | 230 | 1.31E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 44 | 98 | 2.83E-5 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 310 | 372 | 7.0E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 88 | 258 | 7.2E-16 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 326 | 368 | 11.0755 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_052151518.1 | F-box protein At1g67340-like [Oryza glaberrima] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F4V3 | MYND-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_007121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology