Basic Information
Locus ID:
Oco07G003600
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 7431251 | 7433134 | - | Oco07G003600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 50,569.87 Da | 43.93 | 87.99 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 61 | 401 | 4.4E-49 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 297 | 372 | 7.79E-12 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 59 | 404 | 2.33E-51 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 74 | 402 | 3.2E-71 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 296 | 372 | 3.2E-71 | IPR029070 |
| SMART | SM00636 | 2g34 | 58 | 401 | 1.4E-50 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 57 | 418 | 44.241806 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_040379542.1 | nod factor hydrolase protein 1-like [Oryza brachyantha] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0IJ43 | GH18 domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology