Basic Information
Locus ID:
Oco07G002020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 4407289 | 4408224 | - | Oco07G002020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 34,638.10 Da | 56.31 | 78.42 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 1 | 125 | 6.689E-16 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 186 | 296 | 1.2E-16 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 172 | 297 | 2.92E-20 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 2 | 130 | 2.29E-19 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 162 | 311 | 1.0E-28 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1 | 129 | 8.9E-19 | IPR008974 |
| SMART | SM00225 | BTB_4 | 189 | 297 | 1.6E-16 | IPR000210 |
| SMART | SM00061 | math_3 | 1 | 109 | 0.0014 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 189 | 255 | 13.570437 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1 | 126 | 15.225903 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 171 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052152513.1 | BTB/POZ and MATH domain-containing protein 4-like [Oryza glaberrima] | 0 |
| TrEMBL | A3ARQ8 | OSJNBa0042D13.4 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0042D13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_7AG0554940, gene-QOZ80_7AG0554950 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G002020 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g18830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G028500 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001810, Chr28G000690 |