Basic Information
Locus ID:
Oco07G000150
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 292084 | 294027 | + | Oco07G000150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 58,586.32 Da | 66.43 | 76.79 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 248 | 295 | 8.1E-9 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 425 | 510 | 3.2E-31 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 156 | 390 | 9.7E-31 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 249 | 282 | 1.7E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 246 | 276 | 9.361008 | IPR002885 |
| PRINTS | PR01217 | Proline rich extensin signature | 55 | 76 | 7.9E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 89 | 105 | 7.9E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 129 | 154 | 7.9E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 111 | 128 | 7.9E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 102 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_052154343.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Oryza glaberrima] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0DAT9 | DYW_deaminase domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology