Basic Information
Locus ID:
Oco06G030530
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 31855825 | 31862472 | + | Oco06G030530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 75,098.33 Da | 44.28 | 73.15 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 411 | 692 | 6.77018E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 525 | 6.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 481 | 7.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 659 | 692 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 439 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 609 | 5.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 409 | 692 | 1.2E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 376 | 535 | 2.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 536 | 692 | 4.0E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 400 | 439 | 0.0047 | IPR001680 |
| SMART | SM00320 | WD40_4 | 612 | 651 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 525 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 481 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 570 | 609 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 692 | 0.0013 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 407 | 448 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 481 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 492 | 526 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 449 | 481 | 11.866497 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 660 | 692 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 692 | 12.212779 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 6.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 679 | 692 | 6.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 468 | 482 | 6.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 251 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015630804.1 | transcriptional corepressor LEUNIG_HOMOLOG [Oryza sativa Japonica Group] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DZH8 | LisH domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_021678 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology