Basic Information
Locus ID:
Oco06G029160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 30786365 | 30790013 | - | Oco06G029160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 23,810.54 Da | 37.38 | 93.12 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 45 | 191 | 6.0E-36 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 44 | 194 | 5.4E-47 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 125 | 197 | 3.9E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 30 | 124 | 4.8E-36 | - |
| SMART | SM00220 | serkin_6 | 45 | 198 | 3.9E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 45 | 205 | 28.258825 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 166 | 178 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 51 | 75 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05840.1 | Protein kinase superfamily protein. encodes a SHAGGY-like kinase involved in meristem organization. | 0 |
| RefSeq | XP_006650852.1 | shaggy-related protein kinase alpha [Oryza brachyantha] | 0 |
| P51139 | Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa OX=3879 GN=MSK-3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8J5SU43 | Protein kinase domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0003g16844 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah016390, Ah033370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36297, Sbi_jg36299 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl01217 |
| Brassicaceae | Brassica nigra | 1 | BniB07g029680.2N |
| Poaceae | Oryza coarctata | 2 | Oco06G029160, Oco23G009390 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G1045700, Tel2E01G622000, Tel3E01G579800 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG005820, gene_TRIDC7AG067580 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34434 |