Basic Information
Locus ID:
Oco06G027920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 29940059 | 29943525 | - | Oco06G027920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 54,129.94 Da | 63.23 | 53.62 | -1.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 447 | 478 | 1.0E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 349 | 431 | 1.1E-16 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 349 | 431 | 1.1E-22 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 405 | - | - |
| Coils | Coil | Coil | 383 | 412 | - | - |
| Coils | Coil | Coil | 338 | 375 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_006650777.1 | INO80 complex subunit B-like [Oryza brachyantha] | 0 |
| TrEMBL | J3LU20 | PAPA-1 domain-containing protein OS=Oryza brachyantha OX=4533 GN=102702177 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology