Basic Information
Locus ID:
Oco06G027740
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 29776801 | 29781142 | + | Oco06G027740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 60,579.29 Da | 47.26 | 78.94 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 60 | 318 | 6.90597E-138 | - |
| CDD | cd15898 | EFh_PI-PLC | 367 | 499 | 1.84594E-16 | - |
| CDD | cd00051 | EFh | 438 | 500 | 1.15384E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 437 | 500 | 2.0E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 61 | 319 | 7.9E-75 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 379 | 428 | 1.3E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 343 | 512 | 9.34E-41 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 59 | 327 | 4.86E-87 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 147 | 327 | 2.5E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 64 | 146 | 3.6E-29 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 328 | 503 | 7.5E-49 | - |
| SMART | SM00054 | efh_1 | 402 | 430 | 1.6 | IPR002048 |
| SMART | SM00054 | efh_1 | 366 | 394 | 4.9E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 474 | 502 | 1.3E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 61 | 319 | 5.5E-101 | IPR000719 |
| SMART | SM00054 | efh_1 | 438 | 466 | 0.0015 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 61 | 319 | 49.177147 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 470 | 505 | 13.788124 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 434 | 469 | 13.453381 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 398 | 433 | 8.878534 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 362 | 397 | 14.708673 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 483 | 495 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 375 | 387 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 181 | 193 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 67 | 90 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 411 | 423 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 447 | 459 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_006650768.2 | calcium-dependent protein kinase 8 [Oryza brachyantha] | 0 |
| Q75GE8 | Calcium-dependent protein kinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DEK9 | Calcium-dependent protein kinase 30 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_005334 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology