Basic Information
Locus ID:
Oco06G027120
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 29345935 | 29358478 | + | Oco06G027120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 26,042.31 Da | 50.62 | 55.22 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 24 | 138 | 2.3E-21 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 143 | 191 | 6.6E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 133 | 197 | 4.21E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 137 | 2.4E-29 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 210 | 4.9E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 143 | 190 | 1.8E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 22 | 139 | 1.1E-35 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 141 | 192 | 9.2675 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 22 | 139 | 23.282774 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 144 | 189 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_052148183.1 | chromatin remodeling protein EBS-like isoform X1 [Oryza glaberrima] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KK95 | BAH domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology