Basic Information
Locus ID:
Oco06G024390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 27074011 | 27081704 | + | Oco06G024390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 150,020.63 Da | 46.84 | 72.83 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 1001 | 1040 | 1.4932E-15 | - |
| CDD | cd04301 | NAT_SF | 1195 | 1256 | 1.37372E-4 | - |
| Pfam | PF16135 | Tify domain binding domain | 922 | 962 | 8.6E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1187 | 1276 | 4.01E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 993 | 1049 | 4.21E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 989 | 1061 | 7.4E-17 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1172 | 1289 | 3.3E-5 | - |
| SMART | SM00249 | PHD_3 | 1000 | 1041 | 5.8E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1042 | 1101 | 33.0 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 998 | 1043 | 10.0151 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1138 | 1293 | 10.193771 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1001 | 1040 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 623 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 697 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 661 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_006650578.1 | uncharacterized protein LOC102716107 [Oryza brachyantha] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KIZ5 | PHD-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology